empty output

[zeeev]

Hi @HopedWall,

I'm running the tool, and getting a VCF file that contains a header, but no variants were called. The graph was generated by the latest version of minigraph. We do get calls when running monograph call. The verbose output does produce information about the traversal.

gfa_to_vcf --input family.gfa --output family-out.vcf

Does your tool generate a multi-sample vcf with genotypes?