SpiecEasi
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zdk123
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Hi, I'm studying the examples in the tutorial (attached, visualization part: p6-8). However, the results I got are quite different with the Figure 5 in tutorial. I'm guessing there're some...
when 60%~80%, the network just sparse. when 90%, it surprisingly large.  It is cross-domain network, with parameter like se.hmp2
Non explicit closing of the cluster isn't ideal (to me) but it does work.
Hi, I followed the sample tutorial to analyze the intestinal data and got too many edges.What methods are available to filter the results? Thanks! This is the code I am...
Hi There, I can not seem to install SpiecEasi on the mac (specs :- Mac M1 / R studio Version 2024.04.2+764 (2024.04.2+764) / R 4.4.1 GUI 1.80 Big Sur ARM...
I have had some problems downloading the SpieceEasi R package on my Mac Mac OS Sonoma 14.5. I redownloaded gfortran for this version now I get this error message: When...
I have a basic question.. Could we use SPIEC-EASI to find the relationship between species composition (Microbiome relative abundance data) and environmental data? Thank you in advance
Hi, I'm wondering if I can run SE with more than 2 matrices. For example, if I had 16s, 18s and ITS sequences. Would this be possible? And do I...
Hi, I want to share a new way to apply SpiecEasi and gather any input or critiques from the community. I’m working with two datasets collected at the same time...
Hi, I'm working on a cross-domain analysis using a virus-relative abundance matrix and a bacteria abundance matrix obtained by metagenomic sequencing. When I ran the following script, I encountered a...
