SpiecEasi
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zdk123
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Hi, I am having the current error when installing via R-studio on personal macbook (sorry if this is already covered somewhere else, but couldnt find it when searching): > library("devtools")...
Hi, I am trying to run SPIEC-EASI with a phyloseq object containing the metagenomic info of prediabetic individuals. I have followed this tutorial: http://psbweb05.psb.ugent.be/conet/microbialnetworks/spieceasi.php I have managed to perform all...
## Description: I got some out-of-memory warnings while running, they are like this: I would like to know: 1. Is there any way to avoid them? 2. Will the warning...
Hello, I am trying to run spiec-easi() on my data (physeq object) but giving it is so time-consuming, I subsetted my data in order to keep clusters with more than...
Hi. I found one bug in 'multi.spiec.easi' function. I just try to use the function, but it returned error message that 'input list contains data of mixed classes'. It seems...
Hi, I am using SPIEC-EASI through the package NetCoMi and manage to solve most of the technical issues I met thanks to all the great documentation available here. Thank you...
I'm estimating networks using small samples sizes (10-20) and low OTU richness (
Errors when installing SpiecEasi either from R or Terminal - Macbook with macOS Big Sur and R 4.0.5
Dear zdk123, hello! I hope not to be repeating what others already asked here, but I looked at all issues that I could and I could not find a solution...
Hi, I would like to know if it possible to obtain this network with SpiecEasi :  from Mandakovic, D., Rojas, C., Maldonado, J., Latorre, M., Travisany, D., Delage, E.,...
Hi authors, Thanks for your development of this nice package and indeed it can generate more sparse network than sparCC. I am using your package to generate a network for...
