zamydm

Hey, thanks for the speedy reply! I was uncertain of the coarse graining capabilities of Martinize2, so I tried both with the whole system and just the protein. In both...

The complete text is thousands of lines long. It is just the same as the top of the command prompt repeated ad nauseam. It produces that line for every single...

Okay, thanks for the reply. For reference, the .pdb that I generated was produced from Charmm-Gui. I haven't had issues with the protein when running atomistic simulations in OpenMM, so...

Okay, I will try that and let you know how it goes. Thanks so much for your help, you have been awesome!