Zaka Yuen

Hi, Have you added minimap2 to your conda environment? Check if it is installed: `conda list | grep minimap2` If minimap2 is not installed yet, please add this to the...

v0.66 is changes to v1.5.0/bio/minimap2/aligner Does it work for you now?

Hi @Bessyyi What are the current versions of `minimap2` and `samtools` in the environment? Check the versions: `conda list minimap2` `conda list samtools` The Nanopolish pipeline was tested with `minimap2`...

Snakemake will automatically download the wrapper from the [Snakemake Wrapper Repository](https://snakemake-wrappers.readthedocs.io/). The wrapper directive can point to full URLs, including URLs to local files with absolute paths file:// or relative...