O'Young

After uninstalling everything, and reinstall the following it works now: pip install tensorflow pip install diffxpy Please update the documentation. Thanks

If you run "config.sh" again in your conda env. will be using cellxgene v1.1.1

Thanks for the suggestion. To make sure I understand it correctly: instead of using each individual cells, you propose to obtain pseudo bulk samples by a category such as Donor?...

If you run "config.sh" again in your conda env. will be using cellxgene v1.1.1

could you make sure you did install "fgsea" package? Since you mentioned that multiple datasets, you might also interested in this: https://pubmed.ncbi.nlm.nih.gov/34971674/ with github: https://github.com/interactivereport/CellDepot

@angelasanzo, just want to double check with you, does the fgsea installed in the same conda env as the VIP?

It might be caused by the page was opened without any interaction for too long. Does other plotting functions work? You can also "git pull" the newest version, activate your...

@xxlovexx1314 sorry for the delay. Please "@" my name when you reply, so I can get notification. Do you still have issue? or did you try reinstall from fresh? thanks

Hi all, If this error shows on the initial loading, (rather than for each plot). The reason might be the version of "anndata" used to create h5ad files. Currently VIP...

@eusebiu @Dane-Z If you run "config.sh" again in your conda env. will be using cellxgene v1.1.1