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Bio::SearchIO: hmmer3 cannot be found

6

hi, everyone, after update prokka 1.14.6, the running is wrong, the error information is following, Any help will be really appriecated. thanks very much. [12:22:25] Deleting unwanted file: Temp/sprot.faa [12:22:25]...

All frames are zero!

4

Hi, After update snippy, I used snippy again, the error happened. the error information: ### snpEff build -c reference/snpeff.config -dataDir . -gff3 ref WARNING: All frames are zero! This seems...

[bug]

3

**Description** A description of the bug you are experiencing. **Steps to Reproduce** Steps to reproduce the behavior: ``` bactopia ... 3.0.0 bactopia tools ... bakta or kleborate !!ERROR!! ``` **Expected...

Core Nextflow options runName : curious_booth container : quay.io/bactopia/bactopia:3.0.0 launchDir : /home/shsmu/Data/Temp/Results workDir : /home/shsmu/Data/Temp/Results/work projectDir : /home/shsmu/anaconda3/envs/bactopia/share/bactopia-3.0.0 userName : shsmu profile : standard configFiles : /home/shsmu/anaconda3/envs/bactopia/share/bactopia-3.0.0/nextflow.config Required Parameters bactopia...

Dear professor Katholt: recently, according to the default installing steps, I sucessfully installed the Kleborate software: git clone --recursive https://github.com/katholt/Kleborate.git cd Kleborate/kaptive git pull https://github.com/katholt/Kaptive master cd .. python3 setup.py...

update error

6

brew upgrade Error: Calling Formula.sha1 is disabled! Use Formula.sha256 instead. /home/rcmm/.linuxbrew/Library/Taps/chapmanb/homebrew-cbl/bcbio-rnaseq.rb:7:in ' Please report this to the chapmanb/cbl tap! Please report this bug: https://github.com/Linuxbrew/brew/blob/master/docs/Troubleshooting.md#troubleshooting /home/rcmm/.linuxbrew/Library/Homebrew/utils.rb:86:inodeprecated' /home/rcmm/.linuxbrew/Library/Homebrew/utils.rb:94:in odisabled' /home/rcmm/.linuxbrew/Library/Homebrew/compat/sha1.rb:3:insha1' /home/rcmm/.linuxbrew/Library/Taps/chapmanb/homebrew-cbl/bcbio-rnaseq.rb:7:in '...