yuzhiguo07

Same error here. Is there a better solution to this problem?

I used the latest version of the code, but I still got the same error: ``` File "/mnt/smile1/protein_proj/codes/github/openfold_ori/openfold/openfold/data/data_modules.py", line 158, in __getitem__ path + ".cif", file_id, chain_id, alignment_dir File "/mnt/smile1/protein_proj/codes/github/openfold_ori/openfold/openfold/data/data_modules.py",...

I just attached the `pdb_mmcif/obsolete.dat`, I downloaded it on Nov 16, 2021. [obsolete.dat.tar.gz](https://github.com/aqlaboratory/openfold/files/7635345/obsolete.dat.tar.gz) I'm still working on printing the pdbid on each iteration before the bug, or could u give...

I followed the deepmind MSA generation pipeline and it will take a super long time. So I just used a few data to try to train the openfold.

The failed protein is 6u4z_A. @sachinkadyan7

yes `6u4z_A` is the target protein

Sorry for the late reply. I did generate the `release_dates` file: `mmcif_cache.json` and I put it in the correct path. I'm not sure if I was passing the `obsolete.dat` path...

Could you please share the code regarding how you crop the protein sequences which longer then 1000? Since the longest protein in the Deeploc dataset is 13100.