yueli8

Hello mikessh, Thank you for developing so nice software! I tried to install vdjtools in my ubuntu 18.04.5. My R version is 4.1.3. It said: "FAILED to install circlize" Thank...

Hello, Thank you for developing so nice software! It takes me too long time to run the following code. Is that possible I can use command `docker pull` to shorter...

immunarch repLoad immdata<-repLoad(file_path) Error in `df[, vec_names]`:

4

Hello, Thank you for developing so nice software: immunarch. Thank you in advance for great help! Best, Yue Please see atached files. [P61_Tumor.csv](https://github.com/immunomind/immunarch/files/11590525/P61_Tumor.csv) [P61_Blood.csv](https://github.com/immunomind/immunarch/files/11590528/P61_Blood.csv) [P60_Tumor.csv](https://github.com/immunomind/immunarch/files/11590529/P60_Tumor.csv) [P60_Blood.csv](https://github.com/immunomind/immunarch/files/11590530/P60_Blood.csv) [P58_Tumor.csv](https://github.com/immunomind/immunarch/files/11590531/P58_Tumor.csv) [P58_Blood.csv](https://github.com/immunomind/immunarch/files/11590532/P58_Blood.csv) [P57_Tumor.csv](https://github.com/immunomind/immunarch/files/11590533/P57_Tumor.csv) [P57_Blood.csv](https://github.com/immunomind/immunarch/files/11590534/P57_Blood.csv)...

could not find function "findEnrichedSignaling"

1

Hello, Thank you for developing so nice software! Thank you in advance for great help! Best, Yue ``` > df

Error in base::colSums(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions

5

Hello, Thank you for developing so nice software! Thank you in advance for great help! Best, Yue ``` > cellchat cellchat cellchat cellchat cellchat cellchat netVisual_embedding(cellchat, type = "functional", label.size...

unused arguments (min.dist = 0.3, n.neighbors = k)

1

Hello, Thank you for developing so nice software! Thank you in advance for great help! Best, Yue ``` > cellchat library(umap-learn) Error in library(umap - learn) : 'package' must be...

Error in if (dim(prob)[3] <= 25) { : argument is of length zero

2

Hello, Thank you for developing so nice software! Thank you in advance for great help! Best, Yue ``` > cellchat

java.lang.RuntimeException: Unable to parse clonotype string 4

4

Hello, I tried to use vdjtools comvert clonotypes to vdj format. It said: "[ERROR] java.lang.RuntimeException: Unable to parse clonotype string 4". Thanks in advance for great help! Best, Yue ```...