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                                            Yuan

samtools sort: fail to open "./samtools.36604.8950.tmp.1019.bam": Too many open files

I have also meet with the simmilar issue? Have this comment been solved ?

cnv_all.prefix.txt and small.prefix.txt are empty

Hi @mahulchak I have met with similar problems that both cnv_all.out.txt and small.out.txt are empty. My codes are listed as followed: #nucmer nucmer --maxmatch --threads 20 --prefix sam2ref ../0.fasta/HiC_scaffold_1.fasta ../0.fasta/HiC_scaffold_2.fasta...