Yoav Ram

cPickle import error

15

ImportError: No module named 'cPickle' On Python 3.5

Convert to a scipy distribution object

2

It would be nice to have a helper function that takes the output of the model and converts it to a scipy.stats rv object so that it can be used...

Changing the font

1

Is there a way to change the font that nbviewer uses?

I suggest to add Anaconda distribution - its very easy to install and the conda installer is great for numpy/scipy/etc.

Examples

3

Great package, works very well. It could be useful to add some examples to the README. Here's one I made for the logistic growth model: https://gist.github.com/yoavram/5550c3f5daf1772e8352

``` >>> import hamly Traceback (most recent call last): File "", line 1, in File "/Users/xxx/miniconda3/envs/Lobster/lib/python3.6/site-packages/hamly/__init__.py", line 3, in from .loader import get_template File "/Users/xxx/miniconda3/envs/Lobster/lib/python3.6/site-packages/hamly/loader.py", line 40 exec code in...

Gradient computation tutorial

1

Hi I think the docs are missing an example of how we can use sunode to compute gradients wrt to model parameters using the adjoint solver. I'm not even sure...

When running the tutorial code (https://sunode.readthedocs.io/en/latest/without_pymc.html) I get the following error from this line: ``` solver = sunode.solver.Solver(problem, compute_sens=False, solver='BDF') > __init__() got an unexpected keyword argument 'compute_sens' ``` And...

change "sklearn" to "scikit-learn" when trying to install jax-flows, I get the following: ``` The 'sklearn' PyPI package is deprecated, use 'scikit-learn' rather than 'sklearn' for pip commands. Here is...