Yasin Memari

ds-cgpwgs.pl -sp not carried over to cgpFlagCaVEMan.pl -s

2

dockstore-cgpwgs-2.1.0 falls over on mouse bam files mapped using dockstore-cgpmap-3.0.4 giving these errors: No flagList found in flag.vcf.config.WGS.ini for section MUS MUSCULUS_WGS FLAGLIST. No flagging will be done. at /opt/wtsi-cgp/bin/cgpFlagCaVEMan.pl...