Jia-Xing Yue

Hi Martin, Thanks for the explanation! It makes sense. I got several PacBio contigs (assembled by canu) from a single circular genome (yeast mitochondrial genome). Even with circlator, I still...

Hi JoJo, It seems that the problem lies in Circlator cannot detect those tools in your $PATH environment viriable. If you correctly add the full path to those tools to...

Hi JoJo, You need to add the full path to the binary files, for example, for canu it will be: export PATH=$PATH:/home/jojo/Desktop/Software_Bioinformatics/canu-1.5/Linux-amd64/bin Best, Jia-Xing

Same problem here. Python version: 3.7.6 and my python environment was set up via miniconda3. (base) [jxyue@gpunode ~]$ ~/miniconda3/bin/pip install gff3tool Collecting gff3tool Using cached gff3tool-2.0.1.tar.gz (79 kB) Building wheels...

Hi mpoelchau, Thanks for checking! Yes, it is a bit weird. But I managed to installed gff3tool via setup.py , so at least I can use it for my work....

Hi Mikhail, Thank you very much for the explanation! It is very helpful! Best, Jia-Xing

Hi Nicolo, Thanks for the issue reports and feedback. Yes, due to the rapid updates of some dependencies of LRSDAY, especially those related to long read processing, a systematic update...

Hi Avdeev, I've updated my GCC to 4.8 but it seems the problem still exists. [yjx@octopus build]$ make [ 33%] Building CXX object CMakeFiles/mgra.dir/mgra.cpp.o In file included from /home/yjx/Programs/mgra/src/include/defined.h:29, from...