yiqijiang17

Weird insertion result conflict with assembly alignment result

1

Hi, We make a artificial inversion at seg_1055417_1063416:5080 to seg_1055417_1063416:7653 to test svaba in our data. Then we run simulate fastq use newest svaba with default parameter. A inversion should...

run with hifi and Hi-C data get Segmentation fault

3

Hi, I run hifiasm with ~20G hifi reads with paired Hi-C read (50G for read1, 49G for read2), the genome size is around 3G. I had test hifiasm with the...

I am using SvABA for structural variant calling on a bacterial genome with gene edits. I have noticed that **all** edited regions are being discarded in the variant calling, even...