yimmieg

I think a number of people are having issues with dependencies for demuxlet. Ray, can you work with Anton to fix this? J Sent from a phone. Excuse the typos....

you can use it for scATAC-seq data. > On Dec 8, 2019, at 7:56 PM, Guangshuai Jia wrote: > > Hi, > > I also have a similar question regarding...

The flag for atacseq is different. Anton and George ccd here can chime in. Sent from a phone. Excuse the typos. > On Dec 9, 2019, at 3:59 AM, Guangshuai...

+Anton who should have some bandwidth to look into these issues. > On Apr 26, 2019, at 7:46 AM, ibseq wrote: > > is anyone going to pick this up...

These are all multiplexed. Run GSM2560245_A contains 4 samples, run GSM2560246_B contains 4 samples and run GSM2560247_C contains 8. Run GSM2560248_2.1 andGSM2560249_2.2 contain data from 16 samples. > On Oct...

I agree we should tag a release. Hyun, can you take care of this? ~J > On Nov 8, 2018, at 12:45 PM, John Blischak wrote: > > As added...

can you elaborate a little bit more on this? others have called variants with GATK and that seems to work fine.

hi bio-la, do you mind posting the output here? we are working on calibrating demuxlet for 10X V2 (3' and 5') chemistry and hopefully will have an update soon. your...

let’s start with the .best files. ~j > On Feb 6, 2018, at 1:54 AM, biola wrote: > > Which of the outputs would be more useful? logs, .best files......

have you tried running with `--alpha 0 --alpha 0.5`?