Yichao Sun

The temporary solution we have for now, for seedDB release is: Manually change the just created seedDB dumped sql file to fix gene set version validation error.o remove duplicate records...

@jjgao If we are considering other statistical methods other than group comparison, should we proceed with curating the beta values (it is in the process) still? Or we should try...

@ritikakundra Not sure if I understand correctly but we just need to add all the TERT data in this paper to exising `lihc_pancan`? Seems like everything else is already there....

This issue is part of https://github.com/cBioPortal/datahub/issues/154

samples with mutations but not in sequenced case list (#308)

@jjgao @inodb The results are in this spreadsheet uploaded here. Some entrez ID can be clearly removed but a lot of them are still fuzzy. I posted the specific TODOs...

@jjgao: @sbabyanusha presented this paper at our journal club yesterday and she identified that there's no MAF provided along with publication.

@jjgao We were about to email the author, then noticed that, seems like the paper is using the same 34 patient set (@sbabyanusha doubled checked the list in clinical supplemental)...

@jjgao me and @sbabyanusha took another closer look at the study, and realized there are 4 parts of the cohort - Discovery cohort: - 7 patients: mutation data is in...

Emailed the author for the MAF of the 7 primary NSCLC patients.