Ye Yuan

Hi, Thanks a lot for this great package. I noticed that most of the memory footprint comes from the data slot which is a base R array. Every time we...

nearestKNeighbors does not handle seqlevel pruning

2

In current version (commit https://github.com/Bioconductor/GenomicRanges/commit/d20afa47c9e7acbf213bbdc1ded043bd817f2458) `nearestKNeighbors` will fail if `subject` contains seqlevels not used by `x`, due to this line in `.nearestKNeighbors`: ``` seqlevels(subject)