yeji bae

icon company seattle children's hospital icon location seattle icon location Computational Biologist

Results 4 comments of yeji bae

pySCENIC grnboost/distributed issue when running on large matrix

Any updates on this ?

Re-Run SCT leads to error in integrate layer.

Hi, I also face the same issue with Seurat 5.1.0 when i run IntegrateLayers using harmony. ``` obj_SCT

readRDS(object) requires UpdateSeuratObject(object) - results in Error in `[[<-`: ! Cannot add new cells with [[<-

Hi, i just faced the same error when i ran RunPCA() after SCT integration. I was able to run RunPCA() successfully using version 4 but not with version 5. Any...

HHSearch failed: hhsearch: Problem with data file. Is the file empty or is another process reading it?: Invalid argument

Any updates on this? I am running the apptainer container (apptainer pull https://depot.galaxyproject.org/singularity/colabfold%3A1.5.5--pyh7cba7a3_2 + pip install --upgrade "jax[cuda]==0.4.25" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html + set up some env paths) and face the error...