yasin-uzun

How it works, color and vcf

2

This is an incredible tool that must absolutely be published. Thank you for developing this superb program. I have a couple questions and a comment. Even without given any SV...

Hi, I am running squid with two types of inputs: 1) Samples aligned with STAR 2) Samples aligned with BWA When using STAR output, I get less than 100 SV...

Hi, I am trying to use Squid for calling SVs in my datasets. I have 87 samples and all are processed in the same way. I ran Squid as follows:...

Number of split reads supporting the variant is always 0

18

I first compute split and discordant reads then run lumpyexpress as recommended: ``` lumpyexpress \ -B my.bam \ -S my.splitters.bam \ -D my.discordants.bam \ -o output.vcf ``` When I check...