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                                            yasamanrezvani

paramSweep error: $ operator not defined for this S4 class

No, I am waiting for the authors' response. Do you have the same issue?

paramSweep error: $ operator not defined for this S4 class

You can update the function paramSweep() by changing > seu@assays$RNA$counts to > seu@assays$RNA@counts in the source code and use the function. However, I believe this is a temporal fix and...