Yaroslav Halchenko

Got ``` [WARNING] The onset column in events.tsv files should be sorted. (EVENT_ONSET_ORDER) ./sub-0001/ses-02/func/sub-0001_ses-02_task-narratives_acq-mb8_run-01_events.tsv Evidence: schema.rules.rules.checks.events.SortedOnsets ... ./sub-0131/ses-04/func/sub-0131_ses-04_task-social_acq-mb8_run-02_events.tsv Evidence: schema.rules.rules.checks.events.SortedOnsets ... ./sub-0147/ses-04/func/sub-0147_ses-04_task-fractional_acq-mb8_run-01_desc-posner_events.tsv Evidence: schema.rules.rules.checks.events.SortedOnsets Please visit https://neurostars.org/search?q=EVENT_ONSET_ORDER for existing conversations...

Make bids-validator conform to BIDS-App (or execution-spec right away) specification

2

ATM it is ``` Usage: bids-validator [options] ``` whenever BIDS-app interface, as described in new exec spec (bep027) https://bids-standard.github.io/execution-spec/inputs.html#backwards-compatibility ``` bids-app InputDataset OutputLocation AnalysisLevel [options] ... CLI flag: --subject-label ```...

Introspect values in failing checks

3

ATM ``` [ERROR] Participant labels found in this dataset did not match the values in participant_id column found in the participants.tsv file. (PARTICIPANT_ID_MISMATCH) ./participants.tsv Evidence: schema.rules.rules.checks.dataset.ParticipantIDMismatch 1 more files with...

in relation to - https://github.com/bids-standard/bids-validator/issues/1999 to avoid waiting the validation of hundreds of subjects just to see the effect on `README_FILE_MISSING` . Probably would relate to discussion - https://github.com/bids-standard/bids-validator/issues/1937#issuecomment-2156630201 since...

do not add ANSI coloring if stdout is not a tty -- add `--color=auto,yes,no`

1

It has bugged me for a while, even with original bids-validator and now with deno version: if output is redirected to a file we still get ANSI characters in there...

allow multiple configs

1

E.g. if we have "center-wide" one, and then per-dataset specific (btw -- what would be the logical location to keep it around under?), it would be cool if I could...

version reporting in compiled/installed version from url is just "master" or "alpha"

2

I don't know if there is any reasonable solution here, may be somehow possible to install from git exported archive which could do some subs for strings and provide some...

wb_view: blinks whenever moving a mouse through the window

4

See http://www.oneukrainian.com/tmp/20240621-wb_view-blink.webm This is with a fresh build/install of new 2.0.0 on a Debian system. Particular version: `connectome-workbench_2.0.0-1~nd120+1_amd64.deb` and all build-logs are available from https://neuro.debian.net/_files/_buildlogs/connectome-workbench/2.0.0/

fetching and pushing through git

4

We have datalad dataset which we had curated for awhile and now decided to push to openneuro including our (partially squashed) git history. Major differences from the "templated" by openneuro...

To troubleshoot - #3087 I setup new bare repo (just `git init --bare; git annex init` so it did get only git-annex branch) and symlinked the pre-receive hook from openneuro....