Yaroslav Halchenko
Yaroslav Halchenko
There is no that much of "software" in this repo, but I thought it would have been nice to have a paper describing this approach for compute/centralization of containers distribution/execution...
khe khe, description (commit msg) came out probably longer than the changes ;) Not there is that besides seeing myself using it to keep a better log of actions where...
Unfortunately ATM -arm64 builds have not succeeded since I need to somehow specify the architecture. If/when merged Fixes #67 which will collect more notes meanwhile
Well, it would be need to be solved not here but rather by probably creating ReproNim/fmriprep-fake repository, establishing docker build for it, and providing bids-app there which would then need...
so we could e.g. feed results of mriqc etc into ReproPonds and ReproLakes. And idea which came up during monthly ReproNim meeting. Could be done as a part of our...
- original issue came up in - troubleshooted to needing to use -arm64 based images from https://quay.io/repository/singularity/singularity?tab=tags so we need to - establish building both amd64 and arm64 docker images...
Prompted by https://github.com/ReproNim/containers/issues/65 . See my last comment there for more detail. If docker partition runs out of space, create_singularities doesn't detect that and produces incomplete/broken image. Could be due...
https://github.com/ReproNim/containers/blob/master/scripts/singularity_cmd#L101 ```shell SARGS=( -e -B "$PWD" -H "$BHOME" --pwd "$PWD" "$@" ) ``` Usecase came from fmriprep and alerted to by @satra : for any sizeable dataset we need first...
Originally "presented" in training materials issue: https://github.com/ReproNim/module-dataprocessing/issues/26#issuecomment-488298754 Here I would like to have it as a checklist (`[x] (r)` for "waiting the release(s)") - [x] (r) `datalad create -c text2git...
initial EC2 initialization and installation of datalad and datalad-container (git)lena:~/proj/repronim/reproman[master]git $> reproman -l debug create -t aws-ec2 my-nitrc-quick -b instance_type=t2.medium -b image=ami-0acbd99fe8c84efbb You did not specify an EC2 SSH key-pair...