Yaroslav Halchenko
Yaroslav Halchenko
for different projects/resources users might need to use different aws credentials. ATM AFAIK (but I could be wrong) we support only a single `[aws]` section within `~/.config/reproman/reproman.cfg`. We should allow...
We ran ```shell (git)smaug:…eproNim_Workshop_2019_1018/ReproNim_Workshop_2019_1018-reproman[master]git $> reproman run --follow -r my-nitrc-large --orchestrator datalad-pair-run --input "*/sub-*/ses-*/anat/*T1w.nii.gz" --output "simple_workflow_output" --jp "container=containers/repronim-simple-workflow" ./code/simple_workflow/run_demo_workflow.sh -o simple_workflow_output -w workdir --plugin_args 'dict(n_procs=96)' */sub-*/ses-*/anat/*T1w.nii.gz ``` which failed with...
TL;DR question(s): - should I just `reproman run ... datalad drop` to lighten up the remote copy of the dataset? - how to remove entire dataset -- smth like `p="$PWD"...
ATM datalad run commit record, in the `cmd` field just records the job id, e.g. ` "cmd": "20190920-124832-7bf3",` a full example ```shell (git-annex)hopa:…im/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out3[master]git-annex $> reproman run --follow --input 'data/bids/sub-{p[sub]}' -r...
per our discussion during meeting. Also ideally it should pick up a list of recommended ones from 1. updated from online (our repo) 2. from local system so users could...
1. initial run failed to another issue (#442) 2. I have tried to rerun but even removing remotes etc in the dataset but it didn't help 3. only then I...
```shell 2019-05-30 10:51:51,027 [INFO] Entering iteration #1 over Tracers 2019-05-30 10:51:52,060 [INFO] DebTracer: 0 envs with 1 other files remaining 2019-05-30 10:51:52,063 [INFO] RPMTracer: 0 envs with 1 other files...
- [x] if Fabric could ask for credentials (currently we just blow with `PasswordRequiredException`) or we would need to catch/ask/provide - [ ] establish the controlpath for repeated relogins without...
ATM we breed all *.egg-info , /usr/local, etc in the result .yml, shouldn't be there