yanwengong

Error in identifying root and end points use the Markov random-walk model. Help!

1

I am trying to identify root and end points use the Markov random-walk model with the rna velocity package. The plot I want to generate is Fig.3C Diffusion and Back-diffusion...

No loom file generated, no error output

1

I have used RNA velocity before without any problem. However, when I tried to analyze a new set of data with the same code, I cannot get the loom file...

On the same data, I tried run tSNE with 10PCs and 6PCs followed by clusterCells. I found the clustering results are different. I wonder is it because "clusterCells" used the...

p-value correction/adjusting

2

Hi. Is there any p-value correction steps, e.g, Bonferroni or FDR control, included before reporting the p-value? If not, do you think it's an issue? Thank you!

Hi. Thanks for this paper. It's quite inspiring. I am trying to test different models on the DeepSea data set you used in this paper. However, due to the dominant...