Yan Hui

I was using the latest version, installed from conda. ``` nanosim 3.1.0 hdfd78af_0 bioconda ``` I simulated reads from 100 to 10000. The number of total simulated reads (aligned/unaligned) is...

`nanosim` is included in one snakemake workflow. The exact used command shall be as below: ``` MODEL=nanosim/model/training_model_profile c=${MODEL//_model_profile/} simulator.py genome -rg nanosim/silva/cls_ref/id_80_85/ref.fasta -c "$c" -o nanosim/silva/simulate/97_99_1000/simulated -n 100 -b guppy...

I have checked the log. It looks the same as https://github.com/bcgsc/NanoSim/issues/114#issue-839940442 If I met `IndexError: list index out of range` as above, the total counts are less than the set...

@SaberHQ Sorry I made some "wrong" sayings, it shall be >If I met `IndexError: list index out of range` as above, the total counts are less than the set value....

@npdungca I couldn't resolve it. 😢 Instead I chose [badread](https://github.com/rrwick/Badread) for my simulation.

gtdb has two links to download the database, one for Australia users (primary), while the other for the rest of the world. Atlas use the primary link, while it does...