yangymargaret

Hi Kathleen @keoughkath, Thank you very much for your interest in Phylo-HMRF, and thank you very much for helping identify the problems in the code. I am sorry that these...

Hi Kathleen @keoughkath, I do apologize for my late reply. It took me about 20-30 minutes to run the code the example data. The program performs random initialization of parameters....

Hi Kathleen @keoughkath, You're welcome. Please let me know if you have any other questions. Many thanks! Best regards! Yang Yang

Hi Kathleen @keoughkath, Thank you very much for your interest in Phylo-HMRF. Yes, we do plan to update the code to have it compatible with Python 3. I will update...

Hi @cyz0315, Thank you very much for helping identify this problem. I am very sorry for my late reply. I think the problem occurs due to cases of random initiation...

Hi Nicole @nt365, I do apologize for my late reply. I'm not quite sure about the problem based on the current output. I guess there are repeated elements in the...

Hi Nicole @nt365, Thank you very much for your questions. For the new error, would you please check if there are any floating point numbers in the file chromID.synteny.txt that...

Dear Nicole @nt365, I do apologize for the delay in my reply and I hope the delay did not affect your project much. Thank you very much for letting me...

Hi zhjilin @zhjilin, Thank you for your interest in Phylo-HMRF and thank you for this question. I'm sorry for the inadequate description of the Hi-C input files. I have added...

Hi zhjilin @zhjilin, Thank you for your question. Could you please try running the code with NumPy 1.13.3? I just found that the NumPy version I used to test the...