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                                            Or Yaacov

ERROR: the value for setting EXP-TARGETS-BED must be specified logs-sbatch/slurm-18641451.out: qc-target-reads-gatk.sh ERROR: BED DOES NOT EXIST

I get exactly the same error, however I did not add any bed file because I'm working with WGS. line 95 at: https://github.com/igordot/sns/blob/main/segments/qc-target-reads-gatk.sh#L95 throws an exit 1 if there is...

ERROR: the value for setting EXP-TARGETS-BED must be specified logs-sbatch/slurm-18641451.out: qc-target-reads-gatk.sh ERROR: BED DOES NOT EXIST

Yes that's what I figured. Thanks!

Demo fails to calculate wall thickness (ValueError: not enough values to unpack)

No, I have not found a solution..