Chang Ye

Yes. I mean can we parsed the expression as something like '$1>18' and reuse the code of the filter command to deal with the computation afterward

已经多天没更新了:;;;;;;;;;;:::

￥这些没用的不要瞎折腾, 期待有新功能

Thank you for the reply. I want to drop these reads in the alignment output, since they are mapping errors and would significantly overestimate the mapping rate. I can filter...

will there be some side effects? If AS is the large, how can we ensure the resolution of -A and -B arguments.

Is it possible to do end to end mapping using strobealign https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#end-to-end-alignment-versus-local-alignment

Thank you very much for the explanation. I was trying to filter out these reads using the AS tag, but it seems that soft clipping does not add penalty to...

Can the latest release (v 1.6.0) `turn off repeat filtering` now?

These are the color codes. ``` [ggsci_npg_nrc] colors = ["#E64B35", "#4DBBD5", "#00A087", "#3C5488", "#F39B7F", "#8491B4", "#91D1C2", "#DC0000", "#7E6148", "#B09C85"] [ggsci_aaas_default] colors = ["#3B4992", "#EE0000", "#008B45", "#631879", "#008280", "#BB0021", "#5F559B", "#A20056",...

Hi @JosefLitos, thank you for the fix. I have some trouble in using this fork version. After hit the enter key to input the completion text, there is always the...