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Hi Dave, I read you script, and noticed that RO is calculated by ref_seq+ref_span. and ```ref_seq``` is calculated by the following code. ```python # svtyper/svtyper/singlesample.py line 255 to 259 is_ref_seq_A...

Hi authors, `svict` is a really fast tool of calling SVs，but I am a little confused about the format of the output vcf . Here is an example, I do...

Is there a mistake in script MixtureEstimationMethods.py?

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Hi authors, I was interested in how ipdSummary gives out the `frac` value, so I read the source code and I was confused about this function:  Why estimateSingleFraction is...

Hi Ryan, I'm recently using lumpy on some data sets with known structural variants （3 known SVs totally） and I'm trying to optimize my parameters. I found that when I...