Keigo Ide

flip_by_links() is not working

1

Hi I have observed a different behavior regarding flip_by_links() than before. I'm sorry if it's my mistake. ```R library(gggenomes) # to inspect the example data shipped with gggenomes data(package="gggenomes") gggenomes(emale_genes,...

flip() function for genes containing introns

3

Hi again, I faced the problem of flip function against genes containing intron. This is from public database. ```R tmp_gg % rename_seq() %>% unchop(parent_ids) %>% gggenomes() + geom_gene(aes(fill=type, group=parent_ids), size...

Hi. Thanks for this great tool. I am wondering about the OmegaFold license. The license for the software code is Apache-2.0 license, but will a different license be assigned for...

How to create expandable profile databases?

3

Hello. I am currently running a variant impact prediction based on MSA. Recently, an [preprint](https://www.biorxiv.org/content/10.1101/2022.12.13.520259v1.full) was published. > Alignment-based protein mutational landscape prediction: doing more with less, Marina Abakarova, Céline...

Execution against protein fasta and gff

2

Hi, First of all, I would like to thank you for developing this wonderful tool. My question is about the input files of the tool. Currently I have a genome...