SINCERA
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xu-lab
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
Hello, SINCERA, when installed via devtools, requires G1DBN but this package is no longer available in R. I am trying to install SINCERA in a R4 environment but it looks...
Hi, This data `associations.01112014: processed cell type and gene association data downloaded from EBI Expression Atlas (http://www.ebi.ac.uk/gxa/) ` from the E16.5.Rda example data set can be used to do cell...
Hi there! Could you please instruct me in importing data generated by 10X genomics CellRanger to SINCERA? I'm really eager to use the TF prediction function in SINCERA. Thank you...
Sorry, I now it is out of questioning but I am really interested in inferring GRN by Sincera on my single cell but whatever I am trying I am not...
Dear SINCERA team I'm trying to use gene-cell matrix with ENSEMBL gene ID and celltype.enrichment function calls error like: `> sc
the function construct uses an object called **_rexpr_** at line 23 that doesn't match any other name (maybe refers to _rexprs_?) Therefore when creating a SINCERA object from an expression...
I just follow the code you post for the data("E16.5"). And when I try to run sc
Hello, Following the E16.5 demonstration tutorial, an error occurs during the PCA step (mouselung.e16.5.R @ line 60): Error in expr[pc.genes, ] : indice outside limits Session info ------------------------------------------------------------------ setting value...
The dplyr package recently defined a new `exprs` function that masks the `Biobase` one, messing up the normalization step in the SINCERA pipeline. The workaround is to manually specify `exprs=Biobase::exprs...