Xoel Mato Blanco

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icon company Institut Hospital del Mar d'Investigacions Mèdique icon location Barcelona icon location Bioinformatician //PhD Biomedicine (UPF) //MSc Bioinformatics (UAB) //BSc Genetics (UAB)

Results 3 issues of Xoel Mato Blanco

[help needed] complete loss of performance after fine-tuning for integration

Hi! I'm trying to fine-tune scGPT for integration of multiple libraries. After fine-tuning for 5 epochs (recommended is 15 epochs, each takes 8h to run), I have embedded the cells...

Multiple GPU support? (Fine-tuning)

1 comment

Hi, does anybody know how to make use of multiple GPUs for fine-tuning? I have tried to run the pipeline in a computing node with 2 and 3 GPUs available...

Cell type labels required for pre-training?

First, thanks a lot to the creators of this tool and the authors helping the users here on Github! Your advice is incredibly useful. I have a quick question: are...