xingjianfeng100

> @xingjianfeng100 > > This is an expected and difficult problem. > > * If you are aiming at higher specificity, go with `.anchors`, but expect false negatives (especially, genes...

Hi,David. when i run the command `orthofinder -S diamond -M msa -T raxml -ft /work/user/....../OrthoFinder/Results_Mar03_2/ -s /work/user/....../OrthoFinder/Results_Mar03_2/Species_Tree/SpeciesTree_rooted2.txt` the error was > Test can run "raxml" - failed Warning, you specified...

> It is an issue of interactive backend of matplotlib. Can you find and edit the file `~/.conda/envs/SubPhaser/lib/python3.8/site-packages/matplotlib/mpl-data/matplotlibrc` , with setting `backend : agg`? `agg` is s a non-interactive backend....

> Thanks, that would be great, if you could find some time to incorporate TPM in... Should there be a difference between TPM and FPKM? why insisted on using TPM?

My command that "bwa mem ref.fa read1.fq.gz,read1.fq.gz,read1.fq.gz" was reported an error that "[E::main_mem] fail to open file 'read1.fq.gz,read1.fq.gz,read1.fq.gz'". Does it not support compressed files ".gz" as input?