xinghua1001

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Assembly file does not match cprops file. Exiting!

I also got similar problem. Some of the hic file failed to be built and got errors like below. Waiting for some help ...Dumping 25000 resolution matrix HiC file version:...

How Allhic works for simple genomes?

Hi Dr. Zhang, I think there is an error in the ALLHiC_pip.sh script: ### filter bam samtools view -bq $threads sample.bwa_mem.bam  |samtools view -bt seq.HiCcorrected.fasta.fai > sample.unique.bam the $threads may...

Hint reference and background files not available anymore.

Can this software be used for other organisms. How to prepare the reference files?

How to use numbat in other species with a phased genome?

Thanks for reply! In the run_numbat() function, the genome parameter is limited to (hg38, hg19, or mm10). Can we set it to Null?