CCST

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老师,关于使用曼惠特尼U检验找差异基因的具体步骤是怎样的,恳请老师能告知,万分感谢!

R97416032

Question for hyperparameters with DLPFC samples

1

Hi yeye, I am interested in your method CCST. It is a nice method for analyzing spatial transcriptomics! I tried to cluster DLPFC samples with CCST. I did not find...

zy-fang

when runing the preprossing procedure 'data_generation_ST.py' on DLPFC 151507, an error accurs. The reason is that the coordinates from 'filtered_bc_matrix.h5' have 4226 spots, and cell_types from 'metadata.csv' have 4226 spots,...

xiao-kong-long

 When set barpolt=true, then I run the ccst, there is no results.

yaober

quesition about GO

4

Youe work is pretty impressive. Our team want to utilize your model for our task. Taking MERFISH for an instance, when we trained the model, we have no idea to...

yaober

Hi, I got this error when running the data_generation_merfish.py. Here is the screenshot:

lingxincheng08

error of get_adj() function in data_generation_merfish.py

1

in the row of 41 and 44, It will change the position of first cell to (0,0)

yuxiaokang-source

Excellent work! README says the results are stored in folder ***results***, and the spatial distribution of cells are illustrated in ***.png*** files. I do not find them for now. Could...

t5hu