Xiaoli Dong

bcftools consensus: No such sample:

1

Hi, I am testing snippy with one bam file and everything runs ok till the last step " bcftools consensus --sample outdir -f reference/ref.fa -o snps.consensus.fa snps.vcf.gz". After I get...

We are using shovill for our project and it works great in most of the cases. When the sample do not have enough reads, it gives the "Illegal division by...

assembly overlapped amplicon data, where to find contained reads

1

I am assembling tilling amplicon data with canu, the amplicon length varies from 500 to 1200 bp. With canu, I can assembly some of the region together to a single...