xiao00su
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xiao00su
try projection_neighbor_choice='embedding',
there is no 'celltype' in your adata.obs. Maybe you can try to set the 'seurat_clusters'. `cdutil.adata_to_df_with_embed(adata, us_para=['Mu','Ms'], cell_type_para='seurat_clusters', embed_para='X_umap', save_path='cell_type_u_s.csv', gene_list=gene_list)`