scMDC

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1

Thanks very much for your great work! appreciate it if you can help me deal with an simple question! I can not find scMultiCluster_kmeans_totalVI_batch and scMultiClusterBatch. Thanks again for your...

HenryXv1

Cluster label size

1

Hello, thank you very much for your work! When I called the "best_map (L1, L2)" method in utils.py, I found that the clustering label size was larger than the groundtruth...

renjiaxu

Great work, a small typo

3

Thank you for your great work. It seems like there is an indentation error here: https://github.com/xianglin226/scMDC/blob/6de707dabc3a5a22ac8e707d83335f97cb979c2d/src/run_scMDC.py#L169 Can you please take a look?

wehos

how to set Y value?

1

hi, nice a tool and performance is really good. ``` data_mat = h5py.File(args.data_file) x1 = np.array(data_mat['X1']) x2 = np.array(data_mat['X2']) y = np.array(data_mat['Y']) ``` as your "datasets/readme" said, Y: True labels...

lvmt

Hello, the chromatin data (All SMAGE-seq datasets PBMC3K, mouse brain E18) is not found in the data link, can you provide it? thank you very much.

Leifengyuer

'--ae_weight_file'

1

Hello, your work is so excellent that it is worthy of further study. Now I have a problem with the supplied code. In the "run_scMDC_script.sh" script, the '--ae_weight_file' parameter corresponds...

polarisChen789

run_scMDC.py output folder is empty?

4

Your work is very useful to single-cell multiomics anlaysis. I have tried your model to run in Google colab L4 GPU with the example BMNC CITE-seq dataset. I have completely...

kabilanbio

about script

1

 When I run the run_LRP_script.sh, I get this error.

jwzlcx