xfengnefx

`--force-rs` and `--force-preovec` is the same thing, it downsamples reads to meet the kmer count thresholds (--lowq-10, --lowq-5, --lowq-3). `-S` does the above read selection only if the dataset seems...

They are off by default. And for real data, as long as RAM usage and running time is tolerable, it's better to not enable them (I think).

Sorry for the delay. And sorry, the log is confusing, will fix soon. The assembly has finished. It has produced a contig graph with too few contigs, and the post-assembly...

In hifiasm(-meta), each arc is required to be symmetric. Here, s0.ctg000590l overlaps with s0.ctg027907l, and vice versa as it should be. I'm not sure what happened in the overlap length....

In your case, please use both primary and alt contig files, i.e. `p_ctg` and `a_ctg`. Actually the "alternative contig" does not have a significant meaning here, it's more like a...

> with only haploid bacterial DNA Sorry for my confusing comment, meant to say "there were ~~haplotypes~~ closely related strains [with and] without the ARGs". For genomes that have less...

Got the mail, thanks! Will check tonight.

I think --version exits with 1 because a successful run expects an assembly, not the command not crushing. For your workflow, do you need the return value to be different...

I made -h and --version to return 0. Along with the other updates they are pushed to `meta` branch, and waiting for bioconda [pr](https://github.com/bioconda/bioconda-recipes/pull/39031). Will ping once it's done.

Could you try removing the bin files (starts with "asm") and rerun? I tried the current release with ASan, but couldn't get the segfault...