Xian Chang

You can try building the distance index with this branch. Master branch won't recognize this distance index so you'll have to run giraffe from this branch too https://github.com/vgteam/vg/tree/for-brett The command...

Oof that's a big snarl. That is definitely causing you problems We should have built a docker container for the branch automatically but it failed some tests and it didn't...

Can you try building it again now? I fixed the compilation problem but I'm having trouble getting the tests to pass and I can't get the static binary working either

Hmm I'm not very familiar with Docker, I'll ask someone who is. In the meantime, did you clone the branch with `--recursive`? It looks like the `/include` directory isn't in...

Yeah, I haven't fully integrated some of my changes into vg yet so it'll fail some tests. Giraffe should work ok, things just aren't in the format the tests expect....

This is actually a bit slower since I merged vg/master, but I don't think the slow down came from anything in the distance index or clustering ddd07b is before merging...

It's also a bit wrong if I run giraffe with the clustering check turned on but not by much I think

@adamnovak @jltsiren Could you look this over for me please? All the clustering code is in src/snarl_seed_clusterer

Thanks, Jouni!