xamyzhao

evaluate_segmenters.py is a script used only to compare the different segmentation models described in the paper; it is not necessary for training an augmented segmentation model. Searching for "dice" in...

It seems like here, evaluate_segmenters is looking for test data to evaluate your trained segmentation networks on, and is not finding any training or testing data. How many .npz files...

The script is failing right now because it is not finding enough test volumes. If you look at https://github.com/xamyzhao/brainstorm/blob/4634c602881ebe5226c268a4d12488cc79fe2036/src/mri_loader.py#L124, the data loader is looking for 100 test volumes in a...

Thank you! I'm working on cleaning up the code for release and will hopefully have it up within a few weeks.

@Vaelek it is coming along! I have the model pre-training and evaluation code working, and I am cleaning up and debugging the sequential training code. If you are interested in...

Just uploaded the trained models and some sample inference code! Please let me know if you run into any issues with it. I'll be working on cleaning up the rest...

@ak9250 feel free to save or display the images however you wish; the provided script is just some sample code that shows how to run the model. `cv2.imshow` displays images...

@bravelyw I'm sorry, I need more context to figure out your memory usage. Which models are you loading? Does this happen after you load the model, or only once training...

@bravelyw what batch size are you using? How large are your volumes? You're right, looks like init_model_weights wasn't included in this repo. You should be able to implement your own...

Hi! Can you please provide more context on what you have tried? Did you train your own spatial and appearance transform models on your heart data, or are you using...