Scarlett Zou

icon indicating a website link https://github.com/x811zou

icon company Duke University icon location Durham, NC icon location Computational Biology & Bioinformatics Ph.D, Computer Science MS.

Results 4 comments of Scarlett Zou

getCounts with 10X Cellranger output

Hi! I also have the question in obtaining count table from 10x scATACseq @AmandaKedaigle how do you get the count table? Using getCount function + RG-coded-BAM file?

Seurat2 with Veloctyo.R

@ramonvidal How did you make your pbmcY1.rds?

Demuxlet filtering out vast majority of reads that 10X deems good

@LuckyMD May I ask how did you make the .vcf file for a pooled sample with 6 individuals?

Naive question about VCF file

Hi! I also have a question about the .vcf file. In your tutorial, how did you make the vcf file? Was it made from the only bam file from 10X...