Wenqi Li

image regression demo/tutorial

12

**Is your feature request related to a problem? Please describe.** would be great to have an image regression demo/tutorial (for example MR to CT conversion using MAE as loss function)...

this repository needs a contributing guide about how to create tutorials, at least to clarify a few things: - installing dependencies - code format - notebook vs python scripts -...

**Is your feature request related to a problem? Please describe.** would be great to fix the Anaconda Python distribution with a predefined yml file, such as https://github.com/Project-MONAI/MONAIBootcamp2020#instal-local-environment

Tentative date: 17th October minor bug fix release Release a candidate version - [ ] Tag and release PYPI version [X.Y.Z]rc[K] following the contributing guide. - [ ] Make sure...

deprecate `meta_dict` usage in `monai.auto3dseg`

1

for example, this should be deprecated in favor of metatensor reprentations https://github.com/Project-MONAI/MONAI/blob/84e271ec939330e7cedf22b3871c4a2a62d3c2a2/monai/auto3dseg/analyzer.py#L192 https://github.com/Project-MONAI/MONAI/blob/84e271ec939330e7cedf22b3871c4a2a62d3c2a2/monai/auto3dseg/analyzer.py#L764

[Prototype] 4855 compose with lazy resampling

4

Fixes #4855 ### Description The goal of this PR is to add a `lazy_resample: bool` option to `Compose`, so that consecutive spatial transforms could be applied with a single step...

as discussed, would be great to add some capability of detecting obvious outliners to `DataAnalyzer` https://github.com/Project-MONAI/MONAI/blob/70c0443a703a8e5f9930d7b677d14425378b9226/monai/apps/auto3dseg/data_analyzer.py#L57-L64 cc @mingxin-zheng (https://github.com/Project-MONAI/MONAI/discussions/5167)

``` 15:59:42 ====================================================================== 15:59:42 ERROR: test_shape_0 (tests.test_transchex.TestTranschex) 15:59:42 ---------------------------------------------------------------------- 15:59:42 Traceback (most recent call last): 15:59:42 File "/opt/conda/lib/python3.8/site-packages/parameterized/parameterized.py", line 533, in standalone_func 15:59:42 return func(*(a + p.args), **p.kwargs) 15:59:42 File...

Port dense v-net

2

a subtask of #78, port dense v-net ref: https://niftynet.readthedocs.io/en/dev/niftynet.network.dense_vnet.html @eligibson

No source for code: '/__w/MONAI/MONAI/config-3.8.py'.

1

**Describe the bug** After introducing the video dataset with optional opencv dependency (https://github.com/Project-MONAI/MONAI/pull/4767), the premerge ci runs into an issue of not creating code coverage report: ``` No source for...