Wenqi Li

contrastive loss batch size

1

Figured out a solution. In this [line,](https://github.com/Project-MONAI/tutorials/blob/dbe80bdc364f6aaee49b1c8b16cb7e8af76f72de/self_supervised_pretraining/ssl_script_train.py#L128) the argument parsed into the definition of contrastive loss have 'batch_size=batch_size*2'. However, in the function, the batch size has been multiplied again. The...

**Describe the bug** would be great to clarify the requirements in the readme or in the notebooks

**Is your feature request related to a problem? Please describe.** This is to track the compatibility tests for all the tutorials. (For the previous versions of the repo for MONAI...

**Is your feature request related to a problem? Please describe.** as bentoml v1.0 is released, [`tutorials/deployment/bentoml`](https://github.com/Project-MONAI/tutorials/blob/main/deployment/bentoml/mednist_classifier_bentoml.ipynb) becomes out-of-date. the demo should be updated. currently the demo works fine with v0.13.1...

test error: ./modules/jupyter_utils.ipynb

2

**Describe the bug** ``` 03:06:50 Running ./modules/jupyter_utils.ipynb 03:06:50 Checking PEP8 compliance... 03:06:51 Running notebook... 03:06:51 Before: 03:06:51 "max_epochs = 10\n", 03:06:51 After: 03:06:51 "max_epochs = 1\n", 03:06:52 /opt/conda/lib/python3.8/site-packages/papermill/iorw.py:58: FutureWarning: pyarrow.HadoopFileSystem...

nightly tests: `deep_atlas/deep_atlas_tutorial.ipynb`

3

**Describe the bug** ``` Running ./deep_atlas/deep_atlas_tutorial.ipynb Checking PEP8 compliance... Running notebook... Before: "max_epochs = 60\n", "max_epochs = 120\n", After: "max_epochs = 1\n", "max_epochs = 1\n", Before: "val_interval = 5\n", "val_interval...

drop the check of `monai.utils.get_torch_version_tuple() >= (1, 6)`

2

**Describe the bug** because the core codebase now requires at least torch 1.6

**Is your feature request related to a problem? Please describe.** the git history already tracks the original authors of the tutorials, there's no need to include additional info.

nightly test error: profiling_camelyon_pipeline.ipynb

9

**Describe the bug** ``` Running ./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb Checking PEP8 compliance... Running notebook... Executing: 0%| | 0/18 [00:00

cron test error 3d_segmentation/unetr_btcv_segmentation_3d.ipynb

6

**Describe the bug** log: https://github.com/Project-MONAI/MONAI/runs/3073470810?check_suite_focus=true ``` Running ./3d_segmentation/unetr_btcv_segmentation_3d.ipynb Checking PEP8 compliance... stdin:384:2: N816 variable 'split_JSON' in global scope should not be mixedCase split_JSON = "dataset_0.json" ^ stdin:464:17: C408 Unnecessary list...