Wenqi Li

that's updated in monai >=0.9.1 with an option https://github.com/Project-MONAI/MONAI/blob/356d2d2f41b473f588899d705bbc682308cee52c/monai/networks/nets/swin_unetr.py#L81-L83

It's still an issue, reproducible with runner.sh and the latest projectmonai/monai docker image

agreed, it seems this version of the transform is correct https://github.com/Project-MONAI/MONAI/blob/a1c437111a511d17dcd0e04d491747f6677f4def/monai/transforms/utility/array.py#L1078-L1086 which is not needed for the dataset used in the tutorials. however we can still use this as an...

thanks @kate-sann5100, I think option1 would be a good workaround for now. currently the ci is getting this error: ``` 10:10:05 Running ./3d_registration/paired_lung_ct.ipynb 10:10:05 Checking PEP8 compliance... 10:10:05 Running notebook......

thanks for checking, looks like it's a versioning issue and it works fine today, I'm closing this for now.

this is still an issue, one possible reason is that https://github.com/Project-MONAI/tutorials/blob/main/modules/TorchIO_MONAI_PyTorch_Lightning.ipynb changes the pytorch version to 1.10.2

could you please help test with the latest docker image? it seems the issue happens after upgrading the base image to 22.12 https://github.com/Project-MONAI/MONAI/pull/5820 @KumoLiu

I'm able to reproduce it with the latest docker `projectmonai/monai:latest` and run these commands in the `tutorials/` source code folder: ``` pip install -r requirements.txt ./runner.sh -t modules/transform_visualization.ipynb ```

Thanks, that's probably the issue and the ticket you linked has been closed by a workaround. Is the workaround not working? We can skip the test of this notebook.

I think we skip the test and keep this ticket open until the compatibility improves https://github.com/Project-MONAI/tutorials/pull/1164