Won Cheol Yim
Won Cheol Yim
Hi Heng, We have an allotetraploid genome and I wonder that we can separate fragmented contigs into the exact group in allotetraploid genome. Simply can we keep only best hit...
Hello folks @pb-cdunn @mseetin @pb-jchin Our genome size is 800Mbp and looks like highly repeat genome. I ran Falcon twice with different options, but it generated underestimated genome size. The...
Dear Li, Is there any way to align genome 1 to 3 or more? I would like to check the whole genome duplication by using unimap but it seems it...
Dear Dulinwang, Hello! When I tried this, It generated error. python train_general.py -input ../allseq20141110.fasta -output result_test_general.txt -residue-types S,T,Y python train_general.py -input ../allseq20141110.fasta -output result_test_general.txt -residue-types S,T ERROR: size of positive...
Dear Richard, @richardmleggett After running Nextclip, I've got report and category divided reads. I checked number of reads in each category and I found each category reads include Pair end...
Dear Richard, I try to get pdf report but there is some error. I pasted latex/10k.log below. Every analysis was done without error. The error is ### !pdfTeX error: pdflatex...
Dear Xingtan, When I use partition_gmap.py to separate chromosome group for fasta and BAM, some chromosomes didn't have any bam file but fasta file. Do you have any ideas for...
installation by using conda
miniprot seems good to use. https://github.com/lh3/miniprot
Hello, I used your x64 public AMI, and during the installation it is stucking in "Installing Sun Grid Engine..." Here is my log starcluster start physicscluster StarCluster - (http://star.mit.edu/cluster) (v....