wuheng9

Hi Ryan, Thank you! I will check the BED file. At 2020-11-29 20:17:53, "Devon Ryan" wrote: Yes, this indicates a formatting issue with your BED file. — You are receiving...

Hi Dr. Tan, I used the hickit to process my dip-c data. but I got 6709 contact pairs. Is it enough. Later, I use the "hickit -i in.pairs -u -o...

Hi Dr. Tan, Thank you for your suggestion. Yes, I now realize that the few contact pairs might be caused by insufficient restriction digestion. I will digestion cells and construct...

Hi Dr. Tan, Thank you very much! I noticed that the data deposited in NCBI are both short and long reads for a cell. Did you construct sequencing libraries separately...

Hi Dr. Tan, I got that. Thank you! Best, Qian Wang At 2020-10-19 23:08:37, "Longzhi Tan" wrote: Hi @wuheng9, there's only a single library for each sample -- only size-selected...

Hi Tan, I have used the command "hickit -i impute.pairs.gz --out-png impute.png" to generate a 2D contact map in PNG. But I got a black background and no names for...

Hi Tan, Thank you very much! I will try to generate the 2D and 3D structure accroding to you suggestions. Best, Qian At 2020-10-28 00:38:36, "Longzhi Tan" wrote: Hi Qian,...

Hi Tan, When I converted the *.3dg file into a *.cif file, there was error. dip-c color -n home/data/t.dip/hg19.chr.txt /home/data/t.dip/SRR7226668.out.3dg | dip-c vis -c /dev/stdin home/data/t.dip/SRR7226668.out.3dg > /home/data/t.dip/SRR7226668.cif Traceback (most...

Hi Tan, Here is the .3dg file. Thank you! Best, Qian At 2020-10-30 01:14:56, "Longzhi Tan" wrote: Hi @wuheng9, can you send me your .3dg file? You can gzip it...

Hi Tan, I try to attach the file through Github website. But I do not see a link where I can send the file. Best, Qian