Tao Wu

more iteration than setting

6

Hi, When I set the `num_iteration` is 50, the actual running iteration is more than 50: ```{python} config = dict() config["optimizer"] = "Bayesian" config["num_iteration"] = 50 tuner = Tuner(HYPERPARAMETERS, objective=run_one_training,...

install error, invalid pointer

2

Hi, When I installed the package from source (download from Github), the error has occoured: ```{r} > install.packages("~/software/leiden/",repos=NULL,type="source") Installing package into ‘/home/data/public/R/library’ (as ‘lib’ is unspecified) * installing *source* package...

### Issue 内容 你好， 在使用主题时，代码块中有些字符显示不正常，比如引号被渲染成 `&quot`:  但是在编辑器中显示正常：  我使用的编辑器是 WP Githuber MD 插件

CalculateContamination table needs to be sorted

15

Hi, When I run following pipeline: ``` nextflow run /public/slst/home/wutao2/nf-core-sarek-3.1.1/workflow/ --input /public/slst/home/wutao2/sun_data/nf_pipeline/KAPA/Non_PDX/non_pdx_kapa.csv --outdir /public/slst/home/wutao2/sun_data/nf_pipeline/KAPA/Non_PDX/output --genome GATK.GRCh38 -profile singularity --wes --tools mutect2,merge --only_paired_variant_calling --max_cpus 36 --max_memory '128.GB' --save_mapped --save_output_as_bam --igenomes_base /public/slst/home/wutao2/aws-igenomes/igenomes...

Hi, I want to get the electrostatic potential for every 3D grid point and used the APBS tools, the following is the input file: ``` read mol pqr egfr.pqr end...

Rstudio in docker can not run

1

Hi, When I run the docker: ``` docker pull jaspershen/tidymass:latest sudo docker run -e PASSWORD=tidymass -v /home/data/sda/wt/tidymass:/home/rstudio/ -p 8788:8787 jaspershen/tidymass:latest ``` And set the MobaXterm:  It can not log...

Hi, Thank you for offering this tool. I download the docker and run it , but some error happened: ``` docker build . docker run -it 5e3054ed0944 /bin/bash ``` ```...

transId function sometimes give error

2

Hi, Thanks for your tools. When I used transId to transform gene ids, I found that this tool sometimes works fine, but sometimes it gives an error： ``` ec