William Shropshire
William Shropshire
No worries! The html output works well and I’m using summary tools as an initial snapshot of my data so no urgent need. Thanks though! William C. Shropshire, MPH PhD...
Fantastic! I have a dataset that I'm going to test-run this with. Thanks for your continued maintenance of this tool!
Hello Dominic, Seems like my output still has the same issues with the graphical alignment in PDF format when using summarytools v0.9.8. I'll attach the summary file here. [SM-Bacteria_Summary-.pdf](https://github.com/dcomtois/summarytools/files/5793228/SM-Bacteria_Summary-.pdf) Best,...
Also just to follow-up briefly, when my output is switched to 'html' with `dfSummary.graph.magnif = .78` the graphical output looks fine, so again, no worries if you have other issues...
Just FYI, was running into similar computation time issue and included the '--no_static' option, and drastically improved the wall time. Looks like there might be an issue with the kaleido...
Possibly, the most useful output for us is the statistics, but it is nice to have the html files as supplementary.
Okay, just FYI in your argparse help, you mention the default is 0.3 for `--var_pct_full`. Also, if I increase `--snp_min_af` from 0.08 to 0.9, would that reduce the likelihood of...
Hello Ruibang, I'll take your suggestion and try to create a new merge module that takes in a number of conditionals to determine when to favor one call vs another....
Hey, I have submitted quite a few bacterial genomes to NCBI that I have personally curated myself. I think given that it's been only in the past year I have...
Hey Ruibang, I didn't get your email yet, but you can reach me at [email protected]. I pinged Ryan Wick on Slack to see if he could help with providing a...