wlymanambry

Seqrepo not giving back consistent data

6

**Describe the bug** I have found that SeqRepo intermittently returns incorrect sequences. I've loaded millions of small protein sequences. I started seeing sequences returned that couldn't be accounted for. I...

Repeated sequence not being captured entirely, intermittent data issues

1

**Describe the bug** I'm using seqrepo to load many small protein sequences, on the order of millions. What we are finding is that the data loaded does not always match...

Global configuration item not always being used

1

**Describe the bug** I set a global_config setting like: ```python global_config.normalizer.shuffle_direction = 5 ``` I then call assembly_mapper: ```python variant_mapper: assemblymapper.AssemblyMapper = assemblymapper.AssemblyMapper( connection, assembly_name="GRCh37", alt_aln_method="splign", normalize=1, prevalidation_level="INTRINSIC", ) ```...